Publications

2024 | 2022 | 2021 | 2020 | 2019 | 2018201720162015 | 2013 | 20122011 | 20102009200820072006200520042003
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2024

Sho Suzuki: A role for Vps13-meditated lipid transfer at the ER-endosome contact site in ESCRT-mediated sorting. J Cell Biol. DOI: 10.1083/jcb.202307094.

2022

Banjade S, Zhu L, Jorgensen J, Suzuki S, Emr SD. 2021. Recruitment and organization of ESCRT-0 and ubiquitinated cargo via condensation. Science Advances. DOI: 10.1126/scieadv.abm5149

2021

Sardana R, Highland C, Straight B, Chavez C, Fromme JC, Emr SD. 2021. Golgi membrane protein Erd1 is essential for recycling a subset of Golgi glycosyltransferases. eLife. DOI: 10.7554/eLife.70774.

Suzuki SW, Oishi A, Nikulin N, Jorgensen JR, Baile MG, Emr SD. 2021. A PX-BAR protein Mvp1/SNX8 and a dynamin-like GTPase Vps1 drive endosomal recycling. eLife. DOI: 10.7554/eLife.69883.

Banjade S, Shah YH, Tang S, Emr SD. 2021. Design principles of ESCRT-III Vps24-Vps2 module. eLife. DOI: 10.7554/eLife.67709.

Sardana R, Emr SD. 2021. Membrane Protein Quality Control Mechanisms in the Endo-Lysosome System. Trends in Cell Biology. DOI: 10.1016/j.tcb.2020.11.011.

2020

Zhu L, Sardana R, Jin DK, Emr SD. 2020. Calcineurin-dependent regulation of endocytosis by a plasma membrane ubiquitin ligase, adapter, Rcr1. J Cell Biol. 219(8): e201909158.

Jorgensen JR, Tei R, Baskin JM, Michel AH, Kornmann B, Emr SD. 2020. ESCRT-III and ER-PM contacts maintain lipid homeostasis. Mol Biol Cell. 31(12):1302-1313.

2019

Baile MG, Guiney EL, Sanford EJ, MacGurn JA, Smolka MB, Emr SD. 2019. Activity of a ubiquitin ligase adaptor is regulated by disordered insertions in its arrestin domain. Mol Biol Cell. 30(25):3013-3074.

Scorrano L, De Matteis MA, Emr SD, et al. 2019. Coming together to define membrane contact sites. Nature Communications. 10(1):1287.

Suzuki SW, Chuang YS, Li M, Seaman MNJ, Emr SD. 2019. A bipartite sorting signal ensures specificity of retromer complex in membrane protein recycling. J Cell Biol. 218(9):2876-2886.

Banjade S, Tang S, Shah YH, Emr SD. 2019. Electrostatic lateral interactions drive ESCRT-III heteropolymer assembly. Elife. 8: e46207.

Banjade S, Tang S, Emr SD. 2019. Genetic and Biochemical Analyses of Yeast ESCRT. Methods of Mol Biol. 1998:105-116.

Sardana R, Zhu L, Emr SD. 2019. Rsp5 ubiquitin ligase-mediated quality control system clears membrane proteins mistargeted to the vacuole membrane. J Cell Biol. 218(1):234-250.

Guiney EL, Zhu L, Sardana R, Emr SD, Baile MG. 2019. Methods for studying the regulation of membrane traffic by ubiquitin and the ESCRT pathway. Methods in Enzymology. 619:269-291.

2018
Suzuki SW, Emr SD. 2018. Retrograde trafficking from the vacuole/lysosome membrane. Autophagy. 14(9):1654-1655.

Suzuki SW, Emr SD. 2018. Membrane protein recycling from the vacuole/lysosome membrane. J Cell Biol. 217 (5): 1623-1632.

2017
Zhu L, Jorgensen JR, Li M, Chuang YS, Emr SD. 2017. ESCRTs function directly on the lysosome membrane to downregulate ubiquitinated lysosomal membrane proteins. Elife. 6: e26403.

Ho HC, MacGurn JS, Emr SD. 2017. Deubiquitinating enzymes Ubp2 and Ubp15 regulate endocytosis by limiting ubiquitination and degradation of ARTs. Mol Biol Cell. 28:1271-1283.

2016
Guiney EL, Klecker T, Emr SD. 2016. Identification of the endocytic sorting signal recognized by the Art1-Rsp5 ubiquitin ligase complex. Mol Biol Cell. 27(25):4043-54.

Tang S, Buchkovich NJ, Henne WM, Banjade S, Kim YJ, Emr SD. 2016. ESCRT-III activation by parallel action of ESCRT-I/II and ESCRT-0/Bro1 during MVB biogenesis. Elife. Apr 13(5):e15507.

Omnus DJ, Manford AG, Bader JM, Emr SD, Stefan CJ. 2016. PI Kinase Signaling Controls ER-PM CrosstalkMol Biol Cell. 27(7):1170-80.

2015
Tang S, Henne WM, Borbat PJ, Buchkovich NJ, Freed JH, Mao Y, Fromme JC, Emr SD. 2015. Structural basis for activation, assembly and membrane binding of ESCRT-III Snf7 filaments. Elife. 10.7554.

Li M, Koshi T, Emr SD. 2015. Membrane-anchored ubiquitin ligase complex is required for the turnover of lysosomal membrane proteins. J Cell Biol. 211(3):639-52.

Henne WM, Zhu L, Balogi Z, Stefan C, Pleiss JA, Emr SD. 2015. Mdm1/Snx13 is a novel ER-endolysosomal interorganelle tethering protein. J Cell Biol. 210(4): 541-551.

Henne WM, Liou J, Emr SD. 2015. Molecular mechanisms of inter-organelle ER-PM contact sites. Curr Opin in Cell Biol. 26(35): 123-130.

Li M, Rong Y, Chuang Y, Peng D, Emr SD. 2015. Ubiquitin-dependent lysosomal membrane protein sorting and degradation. Mol Cell 57(3): 467-478.

2013
Mellman I, Emr SD. 2013.  A Nobel Prize for membrane traffic: Vesicles find their journey’s end. J Cell Biol. 203 (4): 559.

Buchkovich NJ, Henne WM, Tang S, Emr SD. 2013. Essential N-Terminal Insertion Motif Anchors the ESCRT-III Filament during MVB Vesicle Formation. Dev Cell. 27(2):201-14.

Henne WM, Stenmark H, Emr SD. 2013. Molecular mechanisms of the membrane sculpting ESCRT pathway. Cold Spring Harb Perspect Biol. 1;5(9).

Han BK, Emr SD. 2013. The PI(3,5)P2-dependent Tup1 conversion regulates metabolic reprogramming from glycolysis to gluconeogenesis. JBC. 288:20633-20645.

Zhao Y, Macgurn JA, Liu M, Emr SD. 2013. The ART-Rsp5 ubiquitin ligase network comprises a plasma membrane quality control system that protects yeast cells from proteotoxic stress. Elife. 2:e00459.

Stefan CJ, Manford AG, Emr SD. 2013. ER–PM connections: sites of information transfer and inter-organelle communication. Current Opinion in Cell Bio. 25:434–442.

Manford AG, Stefan CJ, Yuan HL, Macgurn JA, Emr SD. 2013. ER-to-Plasma Membrane Tethering Proteins Regulate Cell Signaling and ER Morphology. Dev Cell. 23(6):1129-40.

2012
Henne WM, Buchkovich NJ, Zhao Y, Emr SD. 2012. The Endosomal sorting complex ESCRT-II mediates the assembly and architecture of ESCRT-III helices.  Cell. 151(2):356-371.

Ling Y, Stefan CJ, Macgurn JA, Audhya A, Emr SD. 2012. The dual PH domain protein Opy1 functions as a sensor and modulator of PtdIns(4,5)P(2) synthesis. EMBO J. 31(13):2882-94.

Wood CS, Hung CS, Huoh YS, Mousley CJ, Stefan CJ, Bankaitis V, Ferguson KM, Burd CG. 2012. Local control of PtdIns4P signaling in the Golgi apparatus by Vps74 and Sac1 phosphoinositide phosphatase. Mol Biol Cell.

Zhong S, Hsu F, Stefan CJ, Wu X, Patel A, Cosgrove MS, Mao Y. 2012. Allosteric activation of the phosphoinositide phosphatase Sac1 by anionic phospholipids. Biochemistry.

MacGurn JA, Hsu PC, Emr SD. 2012. Ubiquitin and Membrane Protein Turnover: From Cradle to Grave. Annu Rev Biochem.

Macdonald C, Buchkovich NJ, Stringer DK, Emr SD, Piper RC. 2012. Cargo ubiquitination is essential for multivesicular body intralumenal vesicle formation. EMBO J. 13(4): 331-338.

2011
Stefan CJ, Henne WM, Emr SD. 2011. Vacuoles, Cell Architecture and Function in the Encyclopedia of Biological Chemistry. W. Lennarz and M.D. Lane (ed.).

Karotki L, Huiskonen JT, Stefan CJ, Ziókowska NE, Roth R, Surma MA, Krogan NJ, Emr SD, Heuser J, Grünewald K, Walther TC. 2011. Eisosome proteins asseble into a membrane scaffold. J. Cell Biol. 195(5): 889-902.

MacGurn JA, Hsu PC, Smolka MB, Emr SD. 2011. TORC1 Regulates Endocytosis via Npr1-Mediated Phosphoinhibition of a Ubiquitin Ligase Adaptor. Cell 147(5): 1104-17.

Shi Y, Stefan CJ, Rue SM, Teis D, Emr SD. 2011. Two novel WD40 domain-containing proteins, Ere1 and Ere2, function in the retromer-mediated endosomal recycling pathway. Mol. Biol. Cell 22(21): 4093-107.

McMurray MA, Stefan CJ, Wemmer M, Odorizzi G, Emr SD, Thorner J. 2011. Genetic interactions with mutations affecting septin assembly reveal ESCRT functions in budding yeast cytokinesis. Biol. Chem. 392(8-9): 699-712.

Henne WM, Buchkovich NJ, Emr SD. 2011. The ESCRT Pathway. Dev. Cell. 21(1): 77-91.

Han BK, Emr SD. 2011. Phosphoinositide [PI(3,5)P2] lipid-dependent regulation of the general transcriptional regulator Tup1. Genes Dev. 25(9): 984-95.

Stefan CJ, Manford AG, Baird D, Yamada-Hanff J, Mao Y, Emr SD. 2011. Osh proteins regulate phosphoinositide metabolism at ER-plasma membrane contact sites. Cell. 144(3): 389-401.

2010
Garrenton LS, Stefan CJ, McMurray MA, Emr SD, Thorner J. 2010. Pheremone-induced anisotropy in yeast plasma membrane phosphatidylinositol-4,5-bisphosphate distribution is required for MAPK signaling. Proc. Natl. Acad. Sci. U.S.A. 107(76): 11805-10.

Manford A, Xia T, Saxena AK, Stefan C, Hu F, Emr SD, Mao Y. 2010. Crystal structure of the yeast Sac1: implication for its phosphoinositide phosphatase function. EMBO J. 29(9): 1489-98.

Teis D, Saksena S, Judson BL, Emr SD. 2010. ESCRT-II coordinates the assembly of ESCRT-III filaments for cargo sorting and multivesicular body vesicle formation. EMBO J. 29(5): 871-83.

2009
Tran JH, Chen CJ, Emr SD, Schekman R. 2009. Cargo sorting into multivesicular bodies in vitro. Proc. Natl. Acad. Sci. U.S.A. 106(41): 17395-400.

Saksena S, Emr SD. 2009. ESCRTs and human disease. Biochem. Soc. Trans. 37: 167-72.

Saksena S, Wahlman J, Teis D, Johnson AE, Emr SD. 2009. Functional reconstitution of ESCRT-III assembly and disassembly. Cell. 136: 97-109.

Emr SD, Glick BS, Linstedt AD, Lippincott-Schwartz J, Luini A, Malhotra V, Marsh BJ, Nakano A, Pfeffer SR, Rabouille C, Rothman JE, Warren G, Wieland FT. 2009. Journeys through the Golgi—taking stock in a new era. J. Cell Biol. 187(4):449-53.

2008
Baird D, Stefan CJ, Audhya A, Weys S, Emr SD. 2008. Assembly of the PtdIns 4-kinase Stt4 complex at the plasma membrane requires Ypp1 and Efr3. J. Cell Biol. 183: 1061-1074.

Lin CH, MacGurn JA, Chu T, Stefan CJ, Emr SD. 2008. Arrestin-related ubiquitin-ligase adaptors regulate endocytosis and protein turnover at the cell surface. Cell. 135: 714-725.

Teis D, Saksena S, Emr SD. 2008. Ordered assembly of the ESCRT-III complex on endosomes is required to sequester cargo during MVB formation. Dev. Cell. 15: 578-589.

Botelho RJ, Efe JA, Teis D, Emr SD. 2008. Assembly of a Fab1 phosphoinositide kinase signaling complex requires the Fig4 phosphoinositide phosphatase. Mol. Biol. Cell. 19: 4273-4286.

Ghazi-Tabatabai S, Saksena S, Short JM, Pobbati A., Veprintsev DB, Crowther RA, Emr SD, Egelman EH, Williams RL. 2008. Structure and disassembly of filaments formed by the ESCRT-III subunit Vps24. Structure. 16: 1345-1356.

Rue SM, Mattei S, Saksena S, Emr SD. 2008. Novel Ist1-Did2 complex functions at a late step in multivesicular body sorting. Mol. Biol. Cell. 19: 475-484.

2007
Saksena, S. J. Sun, T. Chu and S.D.Emr. 2007. ESCRTing proteins in the endocytic pathway.Trends Biochem. Sci., 32: 561-573.

Efe, J.A., R.J. Botelho and S.D.Emr. 2007. Atg18 regulates organelle morphology and fab1 kinase activity independent of its membrane recruitment by phosphatidylinositol 3,5-bisphosphate. Mol. Biol. Cell, 18: 4232-4244.

Obita, T., Saksena, S. Ghazi-Tabatabai, S., Gill, D.J., Perisic, O., and S.D.Emr. 2007. Structural basis for selective recognition of ESCRT-III by the AAA ATPase Vps4. Nature, 449:735-739.

Gill, D.H., H.Teo, O. Perisidic, J. Sun, S.D. Emr and R.L. Williams. 2007. Structural insight into the ESCRT-I-II super-complex and its interaction networks on membranes. EMBO J., 26(2): 600-12

Gill, D.J., J. Sun, O. Perisic, DB Veprintsev, Y. Vallis, S.D. Emr, R.L. Williams. 2007. Structural studies of phosphoinositide 3-kinase-dependent traffic to multivesicular bodies. Biochem. Soc. Symp., 74: 47-57.

2006
Chu, T., J. Sun, S. Saksena, and S.D. Emr. 2006. New component of ESCRT-I regulates endosomal sorting complex assembly. J. Cell Biol., 175(5): 815-23.

Morosova, N. Y. Liang, A.A. Tokagerev, S.H. Chen, R. Cox, J. Andrejic, Z. Lipatova, V.A. Sciorra, S.D. Emr and N. Segev. 2006. TRAPPII subunits are required for the specificity switch of a Ypt-Rab GEF. Nat. Cell Biol., 8: 1263-1269.

Tabuchi, M., A. Audhya, A.B. Parsons, C. Boone and S.D. Emr. 2006. The PI4,5P2 effectors Slm1 and Slim2 link calcineurin and sphingolipid signaling pathway. Mol. Cell Biol., 26: 5861-5875.

Kostelansky, M.S., J. Sun, S. Lee, J. Kim, R. Ghirlando, A. Hierro, S.D. Emr and J.H. Hurley. 2006. Structural and functional organization of the ESCRT-I trafficking complex. Cell, 125: 113-126.

Teo, H., D.J. Gill, J.Sun, O. Perisic, D.B. Veprintsev, Y. Vallis, S.D. Emr and R.L. Williams. 2006.Structures of the ESCRT-I core and the ESCRT-II GLUE domain: central role for GLUE domain in direct linking to ESCRT-I, phosphoinositides and ubiquitin. 2006. Cell, 125: 99-111.

Hurley, J.H., and S.D. Emr. 2006. The ECSRT complexes: structure and mechanism of a membrane-trafficking network. Ann. Rev. Biophys. Biomol. Struc., 35: 277-298.

2005
Parrish, W. P., C. J. Stefan and S. D. Emr. 2005. PI 3-phosphate accumulation in triple lipid phosphatase-deletion mutants triggers lethal hyper-activation of the Rho1p/Pkc1p cell integrity MAP kinase pathway. J. Cell Sci., 118: 5589-5601.

Efe, J. A., F. Plattner, N. Hulo, D. Kressler, P. Linder, S. D. Emr and O. Deloche. 2005. Yeast Mon2p is a highly conserved protein that functions in the cytoplasm-to-vacuole transport pathway and is required for Golgi homeostasis. J. Cell Sci., 1118: 4751-4764.

Efe, J. A., R. J. Botelho and S. D. Emr. 2005. The Fab1 phosphatidylinositol kinase pathway in the regulation of vacuole morphology. Curr. Opin. Cell Biol., 4: 402-408.

Stefan, C. J., S. M. Padilla, A. Audhya and S. D. Emr. 2005. The phosphoinositide phosphatase Sjl2 is recruited to cortical actin patches in the control of vesicle formation and fission. Mol. Cell Biol., 25: 2910-2923.

Shohdy, N., Efe, J.A., Emr, S.D. and Shuman, H.A. 2005. Pathogen effector protein screening in yeast identifies Legionella factors that interfere with membrane trafficking. PNAS, 102: 4866-4871.

Sciorra V.A., A.Audhya, A. B. Parsons, N. Segev, C. Boone and S.D. Emr. 2005. Synthetic genetic array analysis of the PtdIns 4-kinase Pik1p identifies components in a Golgi-specific Ypt31/rab-GTPase signaling pathway. Mol. Biol. Cell, 16: 776-793.

2004
Stefan, C.J., and S.D. Emr. 2004. Vacuoles , Cell Architecture and Function. In: TheEncyclopedia of Biological Chemistry, W. Lennarz and M.D. Lane (ed.) 4:331-336.

Baumeister, W., A. Bachmair, V. Chau, R. Cohen, P. Coffino, G. Demartino, R. Deshaies, J. Dohmen, S. Emr, D. Finley, R. Hampton, C. Hill, M. Hochstrasser, R. Huber, P. Jackson, S. Jentsch, E. Johnson, Y.T. Kwon, M. Pagano, C. Pickart, M. Rechsteiner, M. Scheffner, T. Sommer, W. Tansey, M. Tyers, R. Vierstra, A. Weismann, K.D. Wilkinson, and D. Wolf. 2004. Varshavsky’s contributions. Science, 306: 1290-1292.

Miller, A.L., M. Suntharalingam, S. L. Johnson, A. Audhya, S.D. Emr and S.R. Wente. 2004. Cytoplasmic IP6 production is sufficient for mediating the Gle1-mRNA export pathway. JBC,279:51022-51032.

Audhya, A., R. Loewith, A. B. Parsons, L. Gao, M. Tabuchi, H. Zhou, C. Boone, M. N. Hall and S.D. Emr. 2004. Genome-wide lethality screen identifies new PI4,5P2 effectors that regulate the actin cytoskeleton. EMBO J., 23: 3747-3757.

Hierro, A., Sun Ji, A. S. Rusnak, J. Kim, G. Prag, S.D. Emr and J. Hurley. 2004. Structure of the ESCRT-II endosomal trafficking complex. Nature, 9: 221-225

Parrish, W.R., C. S. Stefan, and S.D. Emr. 2004. Essential role for the myotubularin-related phosphatase Ymr1p and the synaptojanin-like phosphatases Sjl2p and Sjl3p in regulation of phosphatidylinositol 3-phosphate in yeast. Mol. Biol.Cell, 15: 3567-3579.

Alam S.L., Sun Ji, M. Payne, B. D.Welch, B. K. Blake, D. R. Davis, H. H. Meyer., S.D. Emr and W.I. Sundquist. 2004. Ubiquitin interactions of NZF zinc fingers. EMBO J., 23: 1411-1421.

Yu, J.W., J.M. Mendrola, A. Audhya, S. Singh, D. Keleti, D.B. DeWald, D. Murray, S.D. Emr, M.A. Lemmon. 2004. Genome–wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains. Molecular Cell, 13: 677-688.

Katzmann, D.J., S. Sarkar, T. Chu, A. Audhya and S.D. Emr. 2004. Multivesicular body sorting: Ubiquitin ligase Rsp5 is required for the modification and sorting of carboxypeptidaseS. Mol. Biol. Cell, 15: 468-480.

Rudge, S.A., D.M. Anderson and S.D. Emr. 2004. Vacuole size control: Regulation of PtdIns(3,5)P2 levels by the vacuole-associated Vac14-Fig4 complex, a PtdIns(3,5)P2-specific phosphatase. Mol. Biol. Cell, 15: 24-36.

2003
Stefan, C., A. Audhya and S.D. Emr. 2003. FYVE Domains in Membrane Trafficking and Cell Signaling. In: Handbook of Cellular Signaling, R. Bradshaw and E. Dennis (ed.), Academic Press, San Diego, CA., 2: 177-85.

Klionsky, D.J., J.M. Cregg, W.A. Dunn, S.D. Emr, Y. Sakai, A. Sibirny, S. Subramani, M. Thumm, M. Veenhuis and Y. Ohsumi. 2003. A unified nomenclature for yeast autophagy-related genes. Dev. Cell, 5: 539-45.

Audhya, A. and S.D. Emr. 2003. Regulation of PI4,5P2 synthesis by nuclear-cytoplasmic shuttling of the Mss4 lipid kinase. EMBO J., 22: 4223-4236.

Katzmann, D.J., C.J. Stefan, M. Babst and S.D. Emr. 2003. Vps27 recruits ESCRT machinery to endosomes during MVB sorting. J. Cell Biol., 160: 413-423.

Odorizzi, G., D.J. Katzmann, M. Babst, A. Audhya and S.D. Emr. 2003. Bro1 is an endosome-associated class E Vps protein that functions in the MVB-sorting pathway in Saccharomyces cerevisiae. J. Cell Sci., 116: 1893-2003.

2002
Han, G.S., Audhya, A., Markley, D.J., S D. Emr and G. M. Carman. 2002. The Saccharomyces cerevisiae LSB6 Gene Encodes Phosphatidylinositol 4-kinase Activity. J. Biol. Chem, 277: 47709-47718.

Katzmann, D.J., Odorizzi, G. and S. D. Emr. 2002. Receptor downregulation and multivesicular-body sorting. Mol. Cell. Bio. 3: 893-905.

Burda, P., S.M. Padilla, S. Sarkar and S.D. Emr. 2002. Retromer function in endosome-to Golgi retrograde transport is regulated by the yeast Vps34 PtdIns 3-kinase. J. Cell Sci., 115: 3889-3900.

Malhotra, V. and S.D. Emr. 2002. Rothman and Schekman SNAREd by Lasker for trafficking. Cell, 111: 1-3.

Wurmser, A and S.D. Emr. 2002. Novel PI(3)P binding protein, Etf1, required for autophagy in yeast. J. Cell Biol., 158: 761-772.

Nice, D.C., T.K. Sato, P.E. Stromhaug S.D. Emr and D. Klionsky. 2002. Cooperative binding of the cytoplasm to vacuole targeting pathway proteins, Cvt13 and Cvt20, to PtdIns(3)P at the pre-autophagosomal structure is required for selective autophagy. J. Biol. Chem., 277: 30198-30207.

Babst, M., D.J. Katzmann, W.B. Snyder, B. Wendland, and S.D. Emr. 2002. Endosome-associated complex, ESCRT-II, Recruits transport machinery for protein sorting at the multivesicular body. Dev. Cell, 3: 283-289.

Babst, M., D.J. Katzmann, E.J. Estepa, T. Meerloo and S.D. Emr. 2002. ESCRT-III: An endosome-associated heterooligomeric protein complex required for MVB sorting. Dev. Cell, 3: 271-282.

Zhong, Q., Lazar, C.S., Tronchere, H., Sato, T., Meerloo, T., Yeo, M., Songyang, Z., S. D. Emr and G. Gil. 2002.Endosomal localization and function of sorting nexin 1. PNAS, 99: 10: 6767-6772.

Audhya, A. and S. D. Emr. 2002. Stt4 PtdIns 4-kinase localizes to the plasma membrane and functions in the Pkc1-mediated MAP kinase cascade. Dev. Cell, : 2: 593-605.

Shih, S.C., D.J. Katzmann, J.D. Schnell, M. Sutanto, S.D. Emr and L. Hicke. 2002. Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis. Nat. Cell. Biol., 4: 389-393.

Gary, J.D., T.K. Sato, C.J. Stefan C.J. Bonangelino, L.S.Weisman and S.D. Emr. 2002. Regulation of Fab1 phosphatidylinositol 3-phosphate 5-kinase pathway by Vac7 protein and Fig4, a polyphosphoinositide phosphatase family member. Mol. Biol. Cell, 13: 1238-1251.

Bonangelino C.J., J.J. Nau, J.E. Duex, M. Brinkman, A.E. Wurmser, J.D. Gary, S.D. Emr, L.S. Weisman. 2002.Osmotic stress-induced increase of phosphatidylinositol 3,5-bisphosphate requires Vac14p, an activator of the lipid kinase Fab1p. J. Cell Biol., 18: 1015-1028.

Stefan, C.J., A. Audhya and S.D. Emr. 2002. The Yeast Synaptojanin-like proteins control the cellular distribution of phosphatidylinositol(4,5)-bisphosphate. Mol. Biol. Cell, 13: 542-557.

2001
Sato, T.K., M. Overduin, and S.D. Emr. 2001. Location, location, location: Membrane targeting directed by PX domains. Science, 294: 1881-1885.

Simonsen, A., A.E. Wurmser, S.D. Emr and H. Stenmark. 2001. The role of phosphoinositides in membrane transport. Current Opinion in Cell Biol., 13: 485-492.

Foti, M., A. Audhya and S. D. Emr. 2001. Sac1 lipid phosphatase and Stt4 PtdIns 4-kinase regulate a pool of PtdIns(4)P that functions in the control of the actin cytoskeleton and vacuole morphology. Mol. Biol. Cell, 12:2396-2411.

Katzmann, D.J., M. Bast and S.D. Emr. 2001. Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell, 106: 145-155.

Cheever, M.L., T.K. Sato, T. de Beer, T. Kutateladze, S.D. Emr and M. Overduin. 2001. Phox domain interaction with PtdIns(3)P targets the Vam7 t-SNARE to vacuole membranes. Nat. Cell. Biol., 3: 613-618.

Peterson, M.R. and S.D. Emr. 2001. The class C Vps complex functions at multiple stages of the vacuolar transport pathway. Traffic, 2: 476-486.

Costaguta, G., Stefan, C.J., Bensen, E.S., Emr, S.D., Payne, G.S. 2001. Yeast Gga Proteins Function with Clathrin in Golgi to Endosome Transport. Mol. Biol. Cell, 12: 1885-1896.

Rieder, S.E. and .S.D. Emr. 2001. Isolation of subcellular fractions from the yeast Saccharomyces cerevisiae.Curr. Protoc. Cell Biol., Ch 3:, Unit 3.8.

Rieder, S.E. and .S.D. Emr. 2001. Overview of subcellular fractionation procedures for the yeastSaccharomyces cerevisiae. Curr. Protoc. Cell Biol., Ch 3:, Unit 3.7.

Darsow, T., D.J. Katzmann, C.R. Cowles, and S.D. Emr. 2001. Vps41p function in the alkaline phoshatase pathway requires homo-oligomerization and interaction with AP-3 through two distinct domains. Mol. Biol. Cell, 12: 37-51.

2000
Thorner, J., S.D. Emr and John N. Abelson (Eds.) (2000) “Applications of Chimeric Genes and Hybrid Proteins. Part A: Gene Expression and Protein Purification”, Methods in Enzymology, Vol. 326, 617pp.

Thorner, J., S.D. Emr and J.N. Abelson (Eds.) (2000) “Applications of Chimeric Genes and Hybrid Proteins. Part B: Cell Biology and Physiology”, Methods in Enzymology, Vol. 327, 672 pp.

Thorner, J., S.D. Emr and J.N. Abelson (Eds.) (2000) “Applications of Chimeric Genes and Hybrid Proteins. Part C: Protein-Protein Interactions and Genomics”, Methods in Enzymology, Vol. 328, 666 pp..

Klionsky, D.J.. and S.D. Emr. 2000. Autophagy as a regulated pathway of cellular degradation. Science, 290: 1717-1721.

Wurmser, A.E., T.K. Sato and S.D. Emr. 2000. New component of the vacuolar class C Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent Docking/Fusion. J. Cell Biol., 151: 551-562.

Sato, T.K., P. Rehling, M.R. Peterson and S. D. Emr. 2000. Class C Vps protein complex regulates vacuolar SNARE pairing and is required for vesicle docking/fusion. Mol. Cell, 6: 661-671.

Audhya, A, M. Foti, and S. D. Emr. 2000. Distinct roles for the yeast phosphatidylinositol 4-kinases, Stt4p and Pik1p, in secretion, cell growth, and organelle membrane dynamics. Mol. Biol. Cell., 11(8): 2673-2689.

Odorizzi, G., M. Babst, and S.D. Emr. 2000. Phosphoinositide signaling and the regulation of membrane trafficking in yeast, Trends Biochem. Sci., 2 (5): 229-235.

Babst, M., G. Odorizzi, E.J. Estepa and S.D. Emr. 2000. Mammalian tumor susceptibility gene TSG101 and the yeast homologue Vps23p, both function in late endosomal trafficking.Traffic, 1 (3): 248-258.

Darsow, T., G. Odorizzi and S. D. Emr. 2000. Invertase fusion proteins for analysis of protein trafficking in yeast. Methods in Enzymology, Vol. 327, 95-106.

1999

Rehling, P., T. Darsow, D. Katzmann and S. D. Emr. 1999. Formation of AP-3 transport intermediates requires Vps41 function. Nat. Cell Biol. 1: 346-353.

Wendland, B., K. E. Steece and S. D. Emr. 1999. Yeast epsins contain an essential N-terminal ENTH domain, bind clathrin, and are required for endocytosis. EMBO J. 18: 4383-4393.

Abeliovich, H., T. Darsow, and S. D. Emr. 1999. Cytoplasm to vacuole trafficking of Aminopeptidase I requires t-SNARE/Sec1p complex composed of Tlg2p and Vps45p. EMBO J. 18: 6005-6016.

Kutateladze, T., K. D. Ogburn, W. T. Watson, T. deBeer, S. D. Emr, C. G. Burd and M. Overduin. 1999. Phosphatidylinositol 3-phosphate recognition by the FYVE domain. Molecular Cell, 3: 805-811.

Gaynor, E. C., G. Mondesert, S. I. Reed and S. D. Emr. 1999. MCD4 encodes a conserved ER membrane protein essential for GPI anchoring in yeast. Mol. Biol. Cell. 10: 627-648.

Luan, P., W. E. Balch, S. D. Emr and C. G. Burd. 1999. Molecular dissection of guanine nucleotide dissociation inhibitor function in vivo. J. Biol. Chem., 274: 14806-14817.

A. E. Wurmser, J. D. Gary and S. D. Emr. 1999. Phosphoinositide 3-kinases and their FYVE domain-containing effectors as regulators of vacuolar/lysosomal membrane trafficking pathways. J. Biol. Chem. 274: 9129-9132.

Jorgensen, M. U., S. D. Emr and J. R. Winther. 1999. Ligand recognition and domain structure of Vps10p, a vacuolar protein sorting sorting receptor in Saccharomyces cerevisiae. Eur. J. Biochem. 260: 461-469.

Kay, B. K., M. Montarop, B. Wendland and S. D. Emr. 1999. Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery. Protein Science. 8: 435-438.

Peterson, M., C. G. Burd, and S. D. Emr. 1999. Vac1p coordinates rab and phosphatidylinositol 3-kinase signaling in Vps45p-dependent vesicle docking/fusion at the endosome. Current Biology. 9: 159-62.

1998

Odorizzi, M. Babst and S. D. Emr. 1998. Fab1p PtdIns(3)P 5-kinase essential for protein sorting in the multivesicular body. Cell, 95:847-858.

Burd, C. G., M. Babst and S. D. Emr. 1998. Novel pathways, membrane coats and PI Kinase regulation in yeast lysosomal trafficking. Seminars in Cell and Dev. Biol. 9: 527-533.

Gary, J. D., A. E. Wurmser, C.I. Bonangelino, L. S. Weisman and S. D. Emr. 1998. Fab1p is essential for PtdIns(3)P 5-kinase activity and the maintenance of vacuolar size and membrane homeostasis. J. Cell Biol. 143: 65-79.

Wurmser, A. E. and S. D. Emr. 1998. Phosphoinositide signaling and turnover: PtdIns(3)P, a regulator of membrane traffic, is transported to the vacuole and degraded by a process that requires lumenal vacuolar hydrolase activities. EMBO J. 17: 4930-4942.

Darsow, T., C. G. Burd and S. D. Emr. 1998. Acidic di-leucine motif essential for AP-3 dependent sorting and restriction of the functional specificity of the Vam3p vacuolar t-SNARE. J. Cell Biol. 142: 913-922.

Burd, C. G. and S. D. Emr. 1998. Phosphatidylinositol(3)-phosphate signaling mediated by specific binding to RING FYVE domains. Molecular Cell. 2: 157- 162.

Sato, T., T. Darsow and S. D. Emr. 1998. Vam7p, a SNAP25-like molecule, and Vam3p, a Syntaxin homolog, function together in yeast vacuolar protein trafficking. Mol. Cell Biol. 18: 5308-5319.

Odorizzi, G., C. R. Cowles and S. D. Emr. 1998. The AP-3 complex: A coat of many colours. Trends in Cell Biol. 8: 282-288.

Wendland, W., S. D. Emr and H. Riezman. 1998. Protein Traffic in the yeast endocytic and vacuolar protein sorting pathways. Current Opinion in Cell Biology, 10: 513-522.

Seaman, M. N. J., J. M. McCaffery and S. D. Emr. 1998. A membrane coat complex essential for endosome to Golgi retrograde transport in yeast. J. Cell Biol. 142: 665-681.

Babst, M., B. Wendland, E. J. Estepa and S. D. Emr. 1998. The Vps4p AAA ATPase regulates membrane association of a Vps protein complex required for normal endosome function. EMBO J. 17(11): 2982-2993.

Gaynor, E. C., C-Y. Chen, S. D. Emr and T. R. Graham. 1998. ARF is required for maintenance of yeast Golgi and endosome structure and function. Mol. Biol. Cell, 9: 653-670.

Wendland, B. and S. D. Emr. 1998. Pan1p, yeast eps15, functions as a multivalent adaptor that coordinates protein-protein interactions essential for endocytosis. J. Cell Biol., 141: 71-84.

Gaynor, E. C., T. R. Graham and S. D. Emr. 1998. COPI in ER/Golgi and intra- Golgi transport: do yeast COPI mutants point the way. BBA-Molecular Cell Research, 1401: 33-51.

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